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Protein Crystallization Hits

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11 things I wish I had known about protein crystallization optimization when I set up my first optimization trays

  1. No need to get excited about crystals in the drop if there are salt crystals the 'mother liquor'.
  2. Those clear but irregularly shaped objects without facets that look like glass shards that show up in some hanging drops are indeed small pieces of glass that broke off when the cover slides were made. 
  3. Those soft-looking, clear objects on the bottom of the sitting drop wells are not 'pre-crystalline material', they're plastic tray manufacturing artefacts.
  4. Shiny precipitate is a good start for crystal growth optimization.
  5. The color that's associated with very small crystals is not the chromophore of the protein but stems from chromatic aberration of the microscope lens.
  6. Better save a small quantity of shock-frozen protein solution and use as a positive control in follow-up optimization trials than making another prep.
  7. Take an image of the first crystals right when I see them for the first time. Take any image - use my phone if necessary. Otherwise nobody will believe that there were indeed crystals at 16C that 'melted' after tansferring the crystallization tray to the 21C lab with the high-resolution digital camera mounted on the microscope.
  8. It doesn't hurt to take crystals out of the drop, solubilize them in SDS and run them out on a gel. If the main band does not run with the target protein, something's fishy - or something interesting is going on.
  9. The 'flittery precipitate' that formed in the protein solution right before setting up the crystallization trial may be showers of microcrystals. Better check a small sample with a high-magnification microscope.
  10. Do label the crystallization tray, not the cover (of the batch-under-oil crystallization experiment).
  11. I will forget the meaning of "optimized hit condition #4" when it's paper writing time.

Comments

you got an example of "Shiny precipitate is a good start for crystal growth optimization". Pics please
Posted @ Friday, July 03, 2009 1:24 PM by DrSNO
Very useful information! thanks
Posted @ Sunday, December 06, 2009 1:48 AM by gx
Thanks a lot for sharing! 
Can you show us an example of shiny precipitate?  
And, could the shiny precipitate be salt? How can we know whether they are salt or protein before optimization? 
Thank you so much!
Posted @ Thursday, June 17, 2010 8:41 PM by Wei
Hi Wei. 
Good questions. 
Unfortunately I still haven't dug out any images of the elusive 'shiny precipitate'. A vivid example that's in my mind are crystals of Sensory Rhodopsin that I grew > 10 years ago at the Biocenter in Basel. The bulk of the matter had this shiny quality to it when inspected with a stereomicroscope. I could not see any freckles or spots. But when I scooped out a bit and inspected it under phase contrast at highest magnification I saw tiny hexagonal and rhomboid objects. Sizes were ca. 5 um and smaller. Months later larger crystals grew under optimized conditions (lipid supplementation did the trick). I do have images of the small crystals but have no permanent evidence of the 'shinyness'. 
The repertoire of shapes resembled that of the larger crystals and I have no reason to believe that these were salt crystals; on the other side, I don't have direct evidence that they were indeed protein crystals. I'll keep asking people for images of 'shiny precipitate'. Stay tuned.
Posted @ Friday, June 18, 2010 9:51 AM by Peter Nollert
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